Script Description
assemblathon_stats.pl	Extracts the assembly stats of a genome fasta file
batch_genscan.pl	Run the genscan gene prediction program in batch mode. Runs genscan as well as converts output to gff format
extract_region.pl	Given a fasta and a coordinates file extracts the region corresponding to the coordinates
fastq2fasta.pl	Converts a fastq to fasta file
filterByLength.py	Filters a multifasta format file based on a length cutoff
genomeLength.py	Provides the lengths of chromosome as well as the total genome size
getReadLengths.py	Provides the lengths of the reads in a fastq file
gff2gtf.py	Converts gff format to the gtf file
NCBI_retrieval.pl	Retrieves the sequences (EST seq., unigenes, gene seq, books etc) from NCBI repository
seqtk	Post processing and format conversions of fasta/Fastq files
splitfasta.py	Split a multi fasta format file into individual fasta sequence files
vcfutils.pl	Format conversions and filtering of the vcf files
renamefq.py	Rename headers of a fastq file
extract_flanking_regions.pl	Extracts the regions of a fasta file with flanking regions from an assembly fasta file
ISMU_v1.0.tar.gz	ISMU pipeline http://hpc.icrisat.cgiar.org/ISMU/