Open Access Data

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Chickpea

Data Draft whole genome sequence of CDC Frontier, a kabuli chickpea variety
Assembly size ~532.2 Mbp download link
NCBI Accession PRJNA175619
Source Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology 2012, 31:240–246. https://doi.org/10.1038/nbt.2491

Pigeonpea 

Data Draft genome sequence of ICPL 87119 (ASHA), a pigeonpea variety
Assembly size ~ 605.7 Mbp download link
NCBI Accession PRJNA72815
Source Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of  resource-poor farmers. Nature Biotechnology 2012, 30:83–89. https://doi.org/10.1038/nbt.2022

Groundnut

Data Draft genome sequence of cultivated subspecies fastigiata groundnut variety, Shitouqi
Assembly size ~ 2.5 Gbp download link
NCBI Accession PRJNA480120
Source The genome of cultivated peanut provides insights into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics 51, 865–876 (2019). https://doi.org/10.1038/s41588-019-0402-2
Data Draft genome sequence of cultivated subspecies hypogaea groundnut variety, Tifrunner
~2.5 Gbp  download link
NCBI Accession PRJNA419393
Source The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics 51, 877–884 (2019). https://doi.org/10.1038/s41588-019-0405-z
Data Draft genome sequence diploid progenitor species, A. duranensis and A. ipaensis, of cultivated groundnut
Assembly size ~1.2 and ~1.5 Gbp for A. duranensis and A. ipaensis, respectively download link
Source The genome sequences of Arachis duranensis and Arachis ipaensis, the diploid ancestors of cultivated peanut. Nature Genetics 48, 438–446 (2016). https://doi.org/10.1038/ng.3517

Pearl millet 

Data Draft whole genome sequence of pearl millet reference genotype Tift 23D2B1-P1-P5
Assembly size ~1.79 Gbp  download link
NCBI Accession PRJNA294988
Source Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology 2017, 35:969–976. https://doi.org/10.1038/nbt.3943

Chickpea

Data Resequencing of 429 chickpea accessions from 45 countries
Data size ~1.7 Tbp 300 samples
NCBI Accession PRJNA362278
Source Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits. Nature Genetics 201951:857–864.  https://doi.org/10.1038/s41588-019-0401-3
Data Resequencing of 129 varieties released between 1948 and 2012
Data size ~773 Gbp 129 samples
NCBI Accession PRJNA328187
Source Recent breeding programs enhanced genetic diversity in both desi and kabuli varieties of chickpea (Cicer arietinum L.). Scientific Reports 2016, 6:38636. https://doi.org/10.1038/srep38636

Pigeonpea

Data Whole genome resequencing of 292 pigeonpea accessions
Data size ~2.19 Tbp 292 samples
NCBI Accession PRJNA383013
Source Whole-genome resequencing of 292 pigeonpea accessions identifies genomic regions associated with domestication and agronomic traits. Nature Genetics 2017, 49:1082–1088. https://doi.org/10.1038/ng.3872

Groundnut

Data Resequencing data for wild and cultivated groundnut genotypes
Data size ~974 Gbp 27 samples
NCBI Accession PRJNA490835
Source The genome of cultivated peanut provides insight into legume karyotypes, polyploid evolution and crop domestication. Nature Genetics 2019, 51:865–876. https://doi.org/10.1038/s41588-019-0402-2
Data Resequencing data for wild and cultivated groundnut genotypes
Data size ~2.58 Tbp 96 samples
NCBI Accession PRJNA490832
Source The genome sequence of segmental allotetraploid peanut Arachis hypogaea. Nature Genetics 2019, 51:877–884. https://doi.org/10.1038/s41588-019-0405-z

Pearl millet

Data Whole genome resequencing of PMiGAP lines represents germplasm from 27 countries in two continents
Data size ~1.5 Tbp 383 samples
NCBI Accession SRP063925
Source https://doi.org/10.1038/nbt.3943

Groundnut

Data WGRS data for two parents and two pooled samples for foliar disease resistance in groundnut
Data size ~ 79 Gbp 2 samples
NCBI Accession PRJNA511348
Source Whole‐genome resequencing‐based QTL‐seq identified candidate genes and molecular markers for fresh seed dormancy in groundnut. Plant Biotechnology Journal 2020, 18:992-1003. https://doi.org/10.1111/pbi.13266

Pearl millet

Data RAD-sequencing of 580 B- and R-lines of pearl millet
Data size ~614 Gbp 580 samples
NCBI Accession SRP063925
Source Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology 2017, 35:969–976. https://doi.org/10.1038/nbt.3943

Chickpea

Data Integrated analysis of three approaches, viz., transcriptome, small RNA and degradome sequencing was performed to dissect Ascochyta blight resistance mechanism in chickpea
Data size ~1.35 (B) reads 20 samples
NCBI Accession PRJNA479940
Source Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal 2019, 17:914-931. https://doi.org/10.1111/pbi.13026

 

Data Comprehensive Cicer arietinum Gene Expression Atlas (CaGEA) across different plant developmental stages and organs covering the entire life cycle of chickpea
Data size ~817 (M) reads 27 samples
NCBI Accession PRJNA413872
Source The RNA‐Seq‐based high resolution gene expression atlas of chickpea (Cicer arietinum L.) reveals dynamic spatio‐temporal changes associated with growth and development. Plant, Cell & Environment 2018, 41:2209– 2225. https://doi.org/10.1111/pce.13210

 

Data Transcriptome analysis of drought stressed tissues of two Iranian chickpea genotypes
Data size ~624 (M) reads 8 samples
NCBI Accession PRJNA396819
Source RNA-Seq analysis revealed genes associated with drought stress response in kabuli chickpea (Cicer arietinum L.). PLoS ONE 2018, 13(6): e0199774. https://doi.org/10.1371/journal.pone.0199774

 

Data Chickpea transcriptome determined using Roche⁄454 and Illumina sequencing technologies, identified drought-responsive genes and gene-based molecular markers
No. of samples 6 samples
NCBI Accession PRJNA80015
Source Large‐scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi‐arid tropics of Asia and Africa. Plant Biotechnology Journal 2011, 9: 922-931. https://doi.org/10.1111/j.1467-7652.2011.00625.x

 

Data A comprehensive resource of drought- and salinity- responsive expressed sequence tags
Data size 20,162 ESTs
Genebank Accession GR390696-GR410171; GR420430-GR421115
Source A comprehensive resource of drought- and salinity- responsive ESTs for gene discovery and marker development in chickpea (Cicer arietinum L.). BMC Genomics 2009, 10:523. https://doi.org/10.1186/1471-2164-10-523

Pigeonpea

Data Whole genome transcriptome data of two commercially released pigeonpea hybrids and their parental lines
Data size ~242.93 (M) reads 6 samples
NCBI Accession PRJNA549058
Source Genome-wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal. 2020 Feb 3:1-4 https://doi.org/10.1111/pbi.13333

 

Data Comprehensive RNA-Seq data generated from samples representing flowering to mature pod development in pigeonpea using Illumina HiSeq 2500
Data size ~248 (M) reads 6 samples
NCBI Accession PRJNA344973
Source Deciphering Transcriptional Programming during Pod and Seed Development Using RNA-Seq in Pigeonpea (Cajanus cajan). PLoS ONE 2016, 11(10): e0164959. https://doi.org/10.1371/journal.pone.0164959

 

Data Cajanus cajan gene expression atlas (CcGEA) developed from 30 samples representing developmental stages from germination to senescence using Illumina sequencing platform
Data size ~590 (M) reads 30 samples
NCBI Accession PRJNA354681
Source Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation. Journal of Experimental Botany 2017, 68:2037–2054. https://doi.org/10.1093/jxb/erx010

 

Data A comprehensive resource of fusarium wilt and sterility mosaic disease- responsive expressed sequence tags (ESTs) in pigeonpea
Data size 9,888 ESTs 6 samples
Genebank Accession GR463974-GR473857; GR958228-GR958231
Source The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajanL.). BMC Plant Biology 2010, 10:45. https://doi.org/10.1186/1471-2229-10-45

 

Groundnut

Data An integrated Arachis Gene Expression Atlas (AhGEA) for fastigiata subspecies across important plant tissues/ organs covering the entire life cycle of groundnut
Data size ~535 (M) reads 20 samples
NCBI Accession PRJNA484860
Source Arachis hypogea gene expression atlas (AhGEA) for fastigiata subspecies of cultivated groundnut to accelerate functional and translational genomics applications. Plant Biotechnology Journal, Accepted Author Manuscript. https://doi.org/10.1111/pbi.13374

 

Data Transcriptome analysis for drought tolerance in cultivated groundnut
Data size ~369 (M) reads 12 samples
NCBI Accession PRJNA498570
Source Genome-wide transcriptome and physiological analyses provide new insights into peanut drought response mechanisms. Scientific Reports 2020, 10:4071. https://doi.org/10.1038/s41598-020-60187-z

 

Data Transcriptome analysis for in-vitro seed colonization resistance in cultivated groundnut
Data size ~1.34 (B ) reads 16 samples
NCBI Accession PRJNA355201
Source Aspergillus flavus infection triggered immune responses and host-pathogen cross-talks in groundnut during in-vitro seed colonization. Scientific Reports 2017, 7:9659. https://doi.org/10.1038/s41598-017-09260-8

Pearl millet

Data Transcriptome sequence data for two pearl millet accessions
Data size ~155 (M) reads 2 samples
NCBI Accession PRJNA391885
Source Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments. Nature Biotechnology 2017, 35:969–976. https://doi.org/10.1038/nbt.3943

Others

Data RNA-seq data for response of several isolates of A. flavus to increasing oxidative stress
Data size ~1.3 (B) reads 17 samples
NCBI Accession PRJNA348383
Source Responses of Aspergillus flavus to Oxidative Stress Are Related to Fungal Development Regulator, Antioxidant Enzyme, and Secondary Metabolite Biosynthetic Gene Expression. Frontiers in Microbiology 2016, 7:2048. https://doi.org/10.3389/fmicb.2016.02048

Chickpea

Data Integrated analysis of three approaches, viz., transcriptome, small RNA and degradome sequencing was performed to dissect Ascochyta blight resistance mechanism in chickpea
Data size ~532.8 (M) reads 20 samples
NCBI Accession PRJNA479940
Source Integrated transcriptome, small RNA and degradome sequencing approaches provide insights into Ascochyta blight resistance in chickpea. Plant Biotechnology Journal 2019, 17: 914-931. https://doi.org/10.1111/pbi.13026

Pigeonpea

Data Genome-wide small RNA sequencing data of two hybrids and their parental lines
Data size ~143 (M) reads 6 samples
NCBI Accession PRJNA549058
Source Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal, https://doi.org/10.1111/pbi.13333

Pigeonpea

Data Whole genome bisulphite sequence of two commercially released pigeonpea hybrids and their parental lines
Data size ~1133 (M) reads 6 samples
NCBI Accession PRJNA549058
Source Genome‐wide analysis of epigenetic and transcriptional changes associated with heterosis in pigeonpea. Plant Biotechnology Journal, https://doi.org/10.1111/pbi.13333
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