Supplementary Table 1 Details on 90 Cicer accessions used for whole genome re-sequencing (WGRS) and restriction site associated DNA sequencing (RADSeq)

GermplasmParentageGeographical
origin		TypeBreeding line/
Landraces/Wild		ProjectRead typeData
generated		Clean data used for analysis
Number
of reads		 Read
length		 Data size
(bp)
Amit Breeding line/Cultivar Bulgaria kabuli Breeding line/Cultivar WGRS Paired end 32947889 32947889 101 6655473578
Blanco Lechoso Breeding line/Cultivar Spain kabuli Breeding line/Cultivar WGRS Paired end 38691064 38691064 101 7815594928
CDC 512-51 Breeding line/Cultivar Canada desi Breeding line/Cultivar WGRS Paired end 18372733 18372733 101 3711292066
CDC Leader Breeding line/Cultivar Canada kabuli Breeding line/Cultivar WGRS Paired end 30934656 30934656 101 6248800512
CDC Luna Breeding line/Cultivar Canada kabuli Breeding line/Cultivar WGRS Paired end 34936166 34936166 101 7057105532
CDC Vanguard Breeding line/Cultivar Canada desi Breeding line/Cultivar WGRS Paired end 36552733 36552737 101 7383652066
Chefe (ICCV 92318) (ICCV 2 x Surutato 77) x ICC 7344 ICRISAT kabuli Breeding line/Cultivar WGRS Paired end 28627727 28627727 101 5782800854
Genesis090 (FLIP94-090C) Breeding line/Cultivar ICARDA kabuli Breeding line/Cultivar WGRS Paired end 32210496 32210496 101 6506520192
HatTrick Breeding line/Cultivar Australia desi Breeding line/Cultivar WGRS Paired end 32021614 32021614 101 6468366028
ICC 1069 P 919; PI 251784 Russian Federation desi Landrace RADSeq Single end 328406 328406 72 23645232
ICC 1205 P 1120 India desi Landrace RADSeq Single end 5154954 5121024 100 512102400
ICC 12475 ICC 506-EB India desi Landrace RADSeq Single end 8093236 7990094 100 799009400
ICC 13524 P 5153; PI 451433; Ahar 174 Iran desi Landrace RADSeq Single end 149621 149621 70 10473470
ICC 1356 P 1217 India desi Landrace RADSeq Single end 9686246 9633843 100 963384300
ICC 1431 P 1260-1 India desi Landrace RADSeq Single end 6392968 6343181 99 627974919
ICC 14402 ICC 4490 WR; P 5924 WR India desi Landrace RADSeq Single end 1464147 1464147 70 102490290
ICC 14917 TA RM-9 120 TM GARBANZO Unknown desi Landrace RADSeq Single end 6576247 6495288 100 649528800
ICC 15614 A landrace from Tanzania Tanzania desi Landrace RADSeq Single end 8704421 8610360 100 861036000
ICC 15973 ILC 3274 Russian Federation kabuli Landrace RADSeq Single end 5047714 5002181 100 500218100
ICC 16382 vijay India desi Breeding line/Cultivar RADSeq Single end 9024885 8941733 100 500218100
ICC 16644 A landrace from Pakistan Pakistan kabuli Landrace RADSeq Single end 8699572 8610895 100 861089500
ICC 16796 CHK 2026; 02542 Portugal kabuli Landrace RADSeq Single end 1142460 1142460 70 79972200
ICC 17109 Blanco sinaloa 92 Mexico kabuli Landrace RADSeq Single end 7165740 7105327 100 710532700
ICC 1882 P 1506-4 India desi Landrace RADSeq Single end 5313694 5281332 97 512289204
ICC 283 P 223-1 India desi Landrace RADSeq Single end 7814335 7768552 97 753549544
ICC 3512 P 4216-1 Iran desi Landrace RADSeq Single end 171126 171126 72 12321072
ICC 3696 P 4329; 1316 0095 Iran desi Landrace RADSeq Single end 185815 185815 72 13378680
ICC 4918 Annigeri India desi Breeding line/Cultivar RADSeq Single end 5861615 6973357 95 662468915
ICC 4930 C 214 India desi Breeding line/Cultivar RADSeq Single end 10700795 10595164 100 1059516400
ICC 4958 JGC 1 India desi Breeding line/Cultivar RADSeq Single end 11689579 11579322 98 1134773556
ICC 5135 F 100-1 India desi Landraces RADSeq Single end 1155435 1155435 69 79725015
ICC 5270 GL 651 India kabuli Breeding line/Cultivar RADSeq Single end 8306194 8198607 100 819860700
ICC 5810 Harigantars India desi Breeding line/Cultivar RADSeq Single end 8693587 8587698 100 858769800
ICC 5912 T 39-1 India desi Landrace RADSeq Single end 5478664 5422669 100 542266900
ICC 6263 NEC 142 Russian Federation kabuli Landrace RADSeq Single end 8249274 8167648 100 816764800
ICC 7571 P 9681 Israel kabuli Landrace RADSeq Single end 1092632 1092632 70 76484240
ICC 8261 NEC 2430 Turkey kabuli Landrace RADSeq Single end 7272065 7336016 95 696921520
ICC 8950 NEC 243 India desi Landrace RADSeq Single end 5674265 5618529 100 561852900
ICC 995 P 809 Mexico desi Landrace RADSeq Single end 9525363 9459736 100 945973600
ICCC 32 L 550 x L 2 ICRISAT kabuli Breeding line/Cultivar WGRS Paired end 30618033 30618033 101 6184842666
ICCC 37 P 481 x ( JG 62 x P 1630) ICRISAT desi Breeding line/Cultivar RADSeq Single end 9345655 9289776 100 928977600
ICCL 82108 (JG 62 x WR 315) x (P 1363-1 x PRR 1) ICRISAT desi Breeding line/Cultivar RADSeq Single end 1624720 1606127 100 160612700
ICCL 83105 (K 850 x T 3) x (JG 62 x BEG 482) ICRISAT desi Breeding line/Cultivar WGRS paired end 25566405 25566405 101 5164413810
ICCL 87207 K 850 x ICCL 80074 ICRISAT desi Breeding line/Cultivar RADSeq Single end 6887746 6810098 100 681009800
ICCV 00108 IG 9216 x ICCV 10 ICRISAT desi Breeding line/Cultivar RADSeq Single end 7174983 7131960 100 713196000
ICCV 00305 ICCV 5 x ICCL 83007 ICRISAT kabuli Breeding line/Cultivar RADSeq Single end 8421625 8374184 100 837418400
ICCV 03107 (ICCV 92065 x ICCV 88202) x KW 118 ICRISAT desi Breeding line/Cultivar RADSeq Single end 2395555 2360400 100 236040000
ICCV 05530 Pant G-114 x ICC 3935 ICRISAT desi Breeding line/Cultivar RADSeq Single end 8101231 8011084 100 801108400
ICCV 1 H 208 x T 3 ICRISAT desi Breeding line/Cultivar RADSeq Single end 3049893 3025074 100 302507400
ICCV 10 P 1231 x P 1265 ICRISAT desi Breeding line/Cultivar RADSeq Single end 6513854 6470349 100 647034900
ICCV 3 [(K 850 x GW 5/7) x P 458] x (L 550 x Guamuchil) ICRISAT kabuli Breeding line/Cultivar RADSeq Single end 5681309 5634781 100 563478100
ICCV 88202 PRR 1 x ICCC 1 ICRISAT desi Breeding line/Cultivar WGRS Paired end 36726403 36726403 101 7418733406
ICCV 88516 Gaurav x [Pant G-115 x (K 1189 x Chaffa)] ICRISAT desi Breeding line/Cultivar WGRS Paired end 43699669 43699669 101 8827333138
ICCV 89314 ICCL 80074 x ICCC 30 ICRISAT desi Breeding line/Cultivar RADSeq Single end 6463687 6391135 100 639113500
ICCV 89509 (L 550 x Radhey) x (K 850 x H 208) ICRISAT kabuli Breeding line/Cultivar RADSeq Single end 10726485 10632972 100 1063297200
ICCV 90201 GL 769 x P 919 ICRISAT desi Breeding line/Cultivar RADSeq Single end 5467048 5406887 100 540688700
ICCV 91106 BEG 482 x BN 31 ICRISAT desi Breeding line/Cultivar RADSeq Single end 1958509 1941299 100 194129900
ICCV 91302 ICCC 32 x (K 4 x Chaffa) ICRISAT kabuli Breeding line/Cultivar RADSeq Single end 9714911 9622358 100 962235800
ICCV 92006 (GW 5/7 x ICCC 37) x ICC 12271 ICRISAT desi Breeding line/Cultivar RADSeq Single end 7222697 7148631 100 714863100
ICCV 92069 ((K 850 x JG 62) x [((Annigeri x (JG 62 x F 496)) x WR 315] ICRISAT desi Breeding line/Cultivar RADSeq Single end 11177533 11100460 100 1110046000
ICCV 92311 (ICCV 2 x Surutato 77) x ICC 7344 ICRISAT kabuli Breeding line/Cultivar WGRS Paired end 43347618 43347618 101 8756218836
ICCV 92337 (ICCV 2 x Surutato 77) x ICC 7344 ICRISAT kabuli Breeding line/Cultivar WGRS Paired end 24438550 24438550 101 4936587100
ICCV 93512 ICCC 33 x (L-144 x E-100Y(M)) ICRISAT kabuli Breeding line/Cultivar WGRS Paired end 29039467 29039467 101 5865972334
ICCV 93952 (ICCC 37 x GW 5/7) x ICCV 17 ICRISAT desi Breeding line/Cultivar WGRS Paired end 32690755 32690755 101 6603532510
ICCV 93954 (PHULE G-5 x Narsingpur Bold) x ICCC 37 ICRISAT desi Breeding line/Cultivar WGRS Paired end 38244146 38244146 101 7725317492
ICCV 93958 ICCC 42 x ICC 12237 ICRISAT desi Breeding line/Cultivar RADSeq Single end 9712443 9633647 100 963364700
ICCV 94954 ICCC 42 x BG 256 ICRISAT desi Breeding line/Cultivar RADSeq Single end 6874356 6801215 100 680121500
ICCV 95332 (ICCC 32 x L 144) x [(ICCC 49 x FLIP 82-1C) x ICCV 3] ICRISAT kabuli Breeding line/Cultivar RADSeq Single end 9132078 9058576 100 905857600
ICCV 95333 [(ICCC 32 x ICCV 88507) x ICCC 32] x II GAC 83-4-85-M-2-M ICRISAT kabuli Breeding line/Cultivar RADSeq Single end 5763124 5699101 100 569910100
ICCV 95334 [(ICCV 2 x Surutato 77) x ICC 7344] x Blanco Lechozo ICRISAT kabuli Breeding line/Cultivar RADSeq Single end 5086842 5045244 100 504524400
ICCV 95423 (ICC 7676 x ICCC 32) x [(ICCC 49 x FLIP 82-1C) x ICCV 3)] ICRISAT kabuli Breeding line/Cultivar RADSeq Single end 9132078 9058576 100 905857600
ICCV 96029 ICCV 2 x ICCV 93929 ICRISAT desi Breeding line/Cultivar RADSeq Single end 6619046 6548060 99 648257940
ICCV 96836 (BDN 9-3 x K-1184) x ICP 87440 ICRISAT desi Breeding line/Cultivar WGRS Paired end 29335784 29335784 101 5925828368
ICCV 96970 (ICCC 42 x ICCV 88506) x (KPG 59 x JG 74) ICRISAT desi Breeding line/Cultivar RADSeq Single end 804970 804970 69 55542930
ICCV 97105 ICCV 10 x GL 769 ICRISAT desi Breeding line/Cultivar WGRS Paired end 27953682 27953682 101 5646643764
IG 72970 NA Turkey Wild Cicer reticulatum RADSeq Single end 1122969 1122969 70 78607830
IG 73074 NA Turkey Wild Cicer reticulatum RADSeq Single end 1122969 1122969 70 78607830
IG 73082 NA Turkey Wild Cicer reticulatum RADSeq Single end 804970 804970 69 55542930
IG 73086 NA Turkey Wild Cicer reticulatum RADSeq Single end 810517 810517 71 57546707
ILC 3279 Breeding line/Cultivar ICARDA kabuli Breeding line/Cultivar WGRS Paired end 45607807 45607807 101 9212777014
JG 62 Breeding line/Cultivar India desi Breeding line/Cultivar WGRS Paired end 36748200 36748200 101 7423136400
Myles (ICCV 92809) (BDN 9-3 X K-1184) X ICP 87440 ICRISAT desi Breeding line/Cultivar WGRS Paired end 49026648 49026648 101 9903382896
PI 489777 NA Turkey Wild Cicer reticulatum RADSeq Single end 599550 599550 69 41368950
Pistol Breeding line/Cultivar Australia desi Breeding line/Cultivar WGRS Paired end 33467106 33467106 101 6760355412
Slasher Breeding line/Cultivar Australia desi Breeding line/Cultivar WGRS Paired end 31093427 31093427 101 6280872254
WR 315 Breeding line/Cultivar India desi Breeding line/Cultivar WGRS Paired end 37181692 37181692 101 7510701784
Yezin 3/ ICCV 2 [(K 850 x GW 5/7) x P 458] x (L 550 x Guamuchil) ICRISAT kabuli Breeding line/Cultivar WGRS Paired end 43773290 43773290 101 8842204580
Total   14 countries 57 desi, 28 kabuli, 5 wild species acessions 25 landraces, 60 breeding lines/ cultivars,
wild species acessions		     1.371E+09 1.364E+09   2.39222E+11