Supplementary Table 5 Genome sequence assembly organized by chromosome-level pseudomolecules

Linkage group/
pseudomolecule
name
Scaffolds in
pseudomolecule
Scaffolds
placed using
SSR or SNP
markers1
Scaffolds
placed using
synteny
SNP and SSR
markers
mapped on
scaffolds
Pseudomolecule
sizes (bp)2
Ca1 66 22 44 133 48,359,943
Ca2 54 33 21 141 36,634,854
Ca3 54 35 19 135 39,989,001
Ca4 50 37 13 256 49,191,682
Ca5 62 44 18 211 48,169,137
Ca6 81 60 21 197 59,463,898
Ca7 59 33 26 120 48,961,560
Ca8 19 11 8 99 16,477,302
Total 445 275 170 1,292 347,247,377

1Markers included those from Hiremath et al., 2012 and Thudi et al., 2011,
2Includes 10,000-bp spacer sequences between scaffolds.