Supplementary Table 5
Genome sequence assembly organized by chromosome-level pseudomolecules
Linkage group/
pseudomolecule
name
Scaffolds in
pseudomolecule
Scaffolds
placed using
SSR or SNP
markers
1
Scaffolds
placed using
synteny
SNP and SSR
markers
mapped on
scaffolds
Pseudomolecule
sizes (bp)
2
Ca1
66
22
44
133
48,359,943
Ca2
54
33
21
141
36,634,854
Ca3
54
35
19
135
39,989,001
Ca4
50
37
13
256
49,191,682
Ca5
62
44
18
211
48,169,137
Ca6
81
60
21
197
59,463,898
Ca7
59
33
26
120
48,961,560
Ca8
19
11
8
99
16,477,302
Total
445
275
170
1,292
347,247,377
1
Markers included those from Hiremath et al., 2012 and Thudi et al., 2011,
2
Includes 10,000-bp spacer sequences between scaffolds.