Supplementary Table 3
Statistics of the raw and final genome assembly
Raw assembly
*
Final assembly (CaGA v1.0)
*
Contig
Scaffold
Contig
Scaffold
Size (bp)
Number
Size (bp)
Number
Size (bp)
Number
Size (bp)
Number
N90
3,410
20,412
28,897
1,343
4,259
21,897
101,342
491
N80
10,628
12,450
172,437
659
8,704
14,662
274,422
179
N70
17,490
8,755
314,046
428
13,284
10,506
597,855
42
N60
24,520
6,310
488,008
289
18,146
7,608
36,634,854
7
N50
32,062
4,493
645,399
192
23,536
5,432
39,989,001
6
Longest
319,520
6,179,410
258,194
59,463,898
Total size
509,388,783
544,737,065
450,007,017
532,289,632
Total number
179,178
146,435
62,619
7,163
Total number (>=2Kb)
24,303
4,065
29,702
3,659
*
Total number was calculated by using 130 bp and 1 kb cutoff length of sequence in raw and final assembly respectively.